Umap and Bismap

Quantifying mappability of the genome and methylome

Description: The free Umap software package efficiently identifies uniquely mappable regions of any genome. Its Bismap extension identifies mappability of the bisulfite-converted genome (methylome).

Authors: Karimzadeh, M., Ernst, C., Kundaje, A., & Hoffman, M. M.

Lab: Hoffman

Keywords: Umap and Bismap, genome mapping, genomics, methylome, Python

Implementation Language: Python

Licensing: GPL-3

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Karimzadeh, M., Ernst, C., Kundaje, A., & Hoffman, M. M. (2018). Umap and Bismap: quantifying genome and methylome mappability. Nucleic acids research, 46(20), e120-e120.

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Umap and Bismap

Quantifying mappability of the genome and methylome

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