Umap and Bismap
Quantifying mappability of the genome and methylome
Description: The free Umap software package efficiently identifies uniquely mappable regions of any genome. Its Bismap extension identifies mappability of the bisulfite-converted genome (methylome).
Citation
Karimzadeh, M., Ernst, C., Kundaje, A., & Hoffman, M. M. (2018). Umap and Bismap: quantifying genome and methylome mappability. Nucleic acids research, 46(20), e120-e120.