C3D
A tool to predict 3D genomic interactions between cis-regulatory elements
Description: The 3D genome architecture influences the regulation of genes by facilitating chromatin interactions between distal cis-regulatory elements and gene promoters. We implement Cross Cell-type Correlation based on DNA accessibility (C3D), a customizable computational tool that predicts chromatin interactions using an unsupervised algorithm that utilizes correlations in chromatin measurements, such as DNaseI hypersensitivity signals.
Citation
Mehdi, T., Bailey, S. D., Guilhamon, P., & Lupien, M. (2019). C3D: a tool to predict 3D genomic interactions between cis-regulatory elements. Bioinformatics, 35(5), 877-879.