VirChIP Predictions for TF Binding (Cistrome and ENCODE-DREAM)
Virtual ChIP-seq predictions for transcription factor binding in CistromeDB and ENCODE-DREAM datasets
Description: Each gzipped tarball contains BED files of Virtual ChIP-seq posterior probabilities. Each BED file corresponds to binding of a TF in one chromosome (one of chr5, chr10, chr15, and chr20) in a validation cell type of Cistrome (virchipCistromePredictions_V2.0.0.tar.gz) or ENCODE-DREAM Challenge datasets (virchipDreamPredictions_V1.0.0.tar.gz).
V2.0.0 update: We provided our predictions on ENCODE-DREAM Challenge validation chromosomes (chr1, chr8, and chr21) in virchipDreamPredictions_V2.0.0.tar.gz
FOXA1 predictions for binding in ch5 and chr10 of liver, and CTCF predictions for binding in chr10 of MCF-7 were missing from virchipCistromePredictions_V1.0.0.tar.gz
Authors:
Lab: Hoffman
Release Date: 2018
Keywords: VirChIP, Virtual ChIP-seq, transcription factor binding, prediction, cistrome, ENCODE-DREAM
Citation
Karimzadeh, M., Hoffman, M.M. Virtual ChIP-seq: predicting transcription factor binding by learning from the transcriptome. Genome Biol 23, 126 (2022). https://doi.org/10.1186/s13059-022-02690-2689 Samples
Datatype:Virtual ChIP-seq
Species:Human
Disease Type:Other