Mappability of Mouse and Human Genomes/Methylomes

Single-read mappability (Bed files) and multi-read mappability (Wiggle files) of human and mouse genomes and methylomes (bisulfite-converted genome)

Description: This dataset consists of single-read mappability (Bed files) and multi-read mappability (Wiggle files) of human and mouse genomes and methylomes (bisulfite-converted genome). We provide mappability information for the two most recent assemblies of each organism, and for four different read lengths (24 bp, 36 bp, 50 bp, and 100 bp).

Authors:

Karimzadeh, Mehran, Ernst, Carl, Kundaje, Anshul, & Hoffman, Michael M

Lab: Hoffman

Release Date: 2016

Keywords: Umap, Bismap, single-read mappability, multi-read mappability, genome, methylome

Hosted on Zenodo

Citation

Mehran Karimzadeh, Carl Ernst, Anshul Kundaje, Michael M Hoffman, Umap and Bismap: quantifying genome and methylome mappability, Nucleic Acids Research, Volume 46, Issue 20, 16 November 2018, Page e120, https://doi.org/10.1093/nar/gky677

DOI

8 Samples

Datatype:Genome/Methylome Mappability

Species:Human, Mouse

Disease Type:Other

Contact

This dataset is public.

Contact: Michael Hoffman

Contact email: Email