PANETs - RNA-seq, Exome & Genome

Exome, targetted-capture, RNA and shallow whole-genome sequencing of pancreatic neuroendocrine tumours

Description: This dataset includes 51 samples from 19 individuals with pancreatic neuroendocrine tumours. These samples were analyzed using RNA-sequencing, whole-exome sequencing, shallow (~0.3x) whole-genome sequencing, and a 21-gene panel targeted capture sequencing. Everything was sequenced using the Illumina HiSeq and is provided in BAM or FASTQ format.

Authors:

Rene Quevedo, Anna Spreafico, Jeff Bruce, Arnavaz Danesh, Samah El Ghamrasni, Amanda Giesler, Youstina Hanna, Cherry Have, Tiantian Li, S. Y. Cindy Yang, Tong Zhang, Sylvia L. Asa, Benjamin Haibe-Kains, Monika Krzyzanowska, Adam C. Smith, Simron Singh, Lillian L. Siu & Trevor J. Pugh

Lab: Pugh

Year: 2020

Keywords: Pancreatic neuroendocrine tumor, copy-neutral, loss of heterozygosity, aneuploidy

Hosted on EBI

Citation

Quevedo, R., Spreafico, A., Bruce, J. et al. Centromeric cohesion failure invokes a conserved choreography of chromosomal mis-segregations in pancreatic neuroendocrine tumor. Genome Med 12, 38 (2020). https://doi.org/10.1186/s13073-020-00730-9

DOI

51 samples

Sample Type:Pancreatic

Species:Human

Datatype:Sequencing BAMs and FASTQs

Technology:RNA-seq, Exome, Genome

Contact

This dataset is available by request only.

Contact: Carl Virtanen

Contact email: Email